Papers - HIROSE Jun
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Evolution of genetic architecture and gene regulation in biphenyl/PCB-degrading bacteria Reviewed
Hidehiko Fujihara, Jun Hirose, Hikaru Suenaga
Frontiers in Microbiolog 14 1168246 - 1168246 2023.6
Language：English Publishing type：Research paper (scientific journal)
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Jun Hirose
Microorganisms 11 ( 2 ) 438 2023.2
Authorship：Lead author, Corresponding author Language：English Publishing type：Research paper (scientific journal) Publisher：Microorganisms
Integrative and conjugative elements (ICEs) are mobile DNA molecules that can be transferred through excision, conjugation, and integration into chromosomes. They contribute to the horizontal transfer of genomic islands across bacterial species. ICEs carrying genes encoding aromatic compound degradation pathways are of interest because of their contribution to environmental remediation. Recent advances in DNA sequencing technology have increased the number of newly discovered ICEs in bacterial genomes and have enabled comparative analysis of their evolution. The two different families of ICEs carry various aromatic compound degradation pathway genes. ICEclc and its related ICEs contain a number of members with diverse catabolic capabilities. In addition, the Tn4371 family, which includes ICEs that carry the chlorinated biphenyl catabolic pathway, has been identified. It is apparent that they underwent evolution through the acquisition, deletion, or exchange of modules to adapt to an environmental niche. ICEs have the property of both stability and mobility in the chromosome. Perspectives on the use of ICEs in environmental remediation are also discussed.
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Study on arsenic methylation properties of Cellulomonas sp. K31 Reviewed
Munetoshi Miyatake, Jun Hirose, Koichiro Shiomori, Haruhiko Yokoi
Resources Processing 68 ( 3 ) 117 - 123 2022.2
Language：English Publishing type：Research paper (scientific journal)
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A new ICEclc subfamily integrative and conjugative element responsible for horizontal transfer of biphenyl and salicylic acid catabolic pathway in the PCB-degrading strain Pseudomonas stutzeri KF716 Reviewed
Jun Hirose, Takahito Watanabe, Taiki Futagami, Hidehiko Fujihara, Nobutada Kimura, Hikaru Suenaga, Masatoshi Goto, Akiko Suyama and Kensuke Furukawa
Microorganisms 9 ( 12 ) 2462 2021.11
Authorship：Lead author Language：English Publishing type：Research paper (scientific journal)
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Study on Arsenic Methyltransferase Expressed in Recombinant E. coli Reviewed
Munetoshi Miyatake, Koshiro Takase, Jun Hirose, Koichiro Shiomori, Haruhiko Yokoi
Resources Processing 67 ( 2 ) 80 - 85 2020.12
Language：English Publishing type：Research paper (scientific journal)
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Identification of the gene responsible for lignin-derived low-molecular-weight compound catabolism in Pseudomonas sp. strain LLC-1 Reviewed
Jun Hirose , Ryusei Tsukimata, Munetoshi Miyatake, Haruhiko Yokoi
Genes 11 ( 12 ) 1416 2020.11
Language：English Publishing type：Research paper (scientific journal)
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Biphenyl/PCB degrading bph genes of ten bacterial strains isolated from biphenyl-contaminated soil in Kitakyushu, Japan: comparative and dynamic features as integrative conjugative elements (ICEs) Reviewed
Jun Hirose, Hidehiko Fujihara, Takahito Watanabe, Nobutada. Kimura, Hikaru.Suenaga, Taiki Futagami, Masatoshi Goto, Akiko Suyama, Kensuke Furukawa
Genes 10 ( 5 ) 404 2019.5
Language：English Publishing type：Research paper (scientific journal)
北九州のビフェニル汚染土壌より分離された10菌株のビフェニル/分解性細菌のゲノム配列上のビフェニル分解経路をコードするbph遺伝子の比較解析を行い、４つのグループに分類した。３つのグループのbph遺伝子は染色体組み型の接合伝達因子ICEを介して、土壌細菌間で伝達され、多様化していることを明らかにした。
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Pseudomonas furukawaii sp. nov., a polychlorinated biphenyldegrading bacterium isolated from biphenyl-contaminated soil in Japan Reviewed
Nobutada Kimura, Takahito Watanabe, Hikaru Suenaga, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Satoshi Hanada, Jun Hirose
International Journal of Systematic and Evolutionary Microbiology 68 ( 5 ) 1429 - 1435 2018.5
Language：English Publishing type：Research paper (scientific journal)
ビフェニル汚染サイトから分離されたPCB/ビフェニル分解性細菌KF707株の16SrRNA遺伝子の配列と脂肪酸組成、生理学的諸性質を調べ、本菌株が他の近縁種の細菌とは異なる新種であることを確認した。新たに見いだした新種をPseudomonas furukawaiiと命名した。
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Draft genome sequence of Pseudomonas sp. strain LLC-1 (NBRC 111237), capable of metabolizing lignin-derived low-molecular-weight compounds Reviewed
Jun Hirose, Naoki Tsuda, Munetoshi Miyatake, Haruhiko Yokoi, Jun Shimodaira
Genome Announcements 6 e00308-18. 2018.4
Language：English Publishing type：Research paper (scientific journal)
リグニン由来低分子化合物分解性細菌Pseudomonas sp. strain LLC-1のドラフトゲノム配列を決定し、アノテーションを行った。データーベースに登録したゲノム配列の登録番号を公開した。
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Insights into the genomic plasticity of Pseudomonas putida KF715, a strain with unique biphenyl-utilizing activity and genome instability properties Reviewed
Hikaru Suenaga, Hidehiko Fujihara, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Taiki Futagami, Masatoshi Goto, Jun Shimodaira, Kensuke Furukawa
Enviromnmental Microbiology Reports 9 ( 5 ) 589 - 598 2017.9
Language：English Publishing type：Research paper (scientific journal)
PCB/ビフェニル分解性細菌Pseudomonas putida KF715のサザンブロット解析により、ビフェニルおよびサリチル酸代謝経路をコードするbph-sal遺伝子クラスターは、染色体とプラスミドの両方に存在することを確認した。KF715株およびKF715株のbph-sal遺伝子欠失株の全ゲノム配列の比較から、KF715株のゲノムの不安定性に寄与しうる多数の遺伝因子を見いだした。
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Complete genome sequence of the Polychlorinated biphenyl-degrading bacterium Pseudomonas putida KF715 (NBRC 110667). Isolated from biphenyl-contaminated soil Reviewed
Hikaru Suenaga,a Atsushi Yamazoe,b Akira Hosoyama,b Nobutada Kimura, Jun Hirose, Takahito Watanabe, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 5 ( 7 ) e01624-16 2017.2
Language：English Publishing type：Research paper (scientific journal)
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Draft genome sequence of the polychlorinated biphenyl-degrading bacterium Pseudomonas stutzeri KF716 (NBRC 110668) Reviewed
Jun Hirose, Atsushi Yamazoe, Akira Hosoyama, Nobutada Kimura, Hikaru Suenaga, Takahito Watanabe, Hideko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 3 ( 5 ) e01215-15 2015.9
Language：English Publishing type：Research paper (scientific journal)
ビフェニル汚染サイトから分離されたPCB/ビフェニル分解性細菌Pseudomonas stutzeri KF716のドラフトゲノム配列を決定し、アノテーションを行った。データーベースに登録したゲノム配列の登録番号を公開した。
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Draft genome sequence of the polychlorinated biphenyl-degrading bacterium Comamonas testosteroni KF712 (NBRC 110673) Reviewed
Jun Hirose, Atsushi Yamazoe, Akira Hosoyama, Nobutada Kimura, Hikaru Suenaga, Takahito Watanabe, Hideko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 3 ( 5 ) e01214-15 2015.9
Language：English Publishing type：Research paper (scientific journal)
ビフェニル汚染サイトから分離されたPCB/ビフェニル分解性細菌Comamonas testosteroni KF712のドラフトゲノム配列を決定し、アノテーションを行った。データーベースに登録したゲノム配列の登録番号を公開した。
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Draft genome sequence of Pseudomonas aeruginosa KF702 (NBRC110665), a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil Reviewed
Hideko Fujihara, Atsushi Yamazoe, Akira Hosoyama, Hikaru Suenaga, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 3 ( 3 ) e00517-15 2015.5
Language：English Publishing type：Research paper (scientific journal)
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Draft genome sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a polychlorinated biphenyl-degrading bacterium isolated from biphenyl-contaminated soil Reviewed
Hideko Fujihara, Atsushi Yamazoe, Akira Hosoyama, Hikaru Suenaga, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements ３ ( ３ ) e00473-15 2015.5
Language：English Publishing type：Research paper (scientific journal)
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Draft genome sequence of cupriavidus pauculus strain KF709, a biphenyl-utilizing bacterium isolated from biphenyl-contaminated soil Reviewed
Takahito Watanabe, Atsushi Yamazoe, Akira Hosoyama, Hidehiko Fujihara, Hikaru Suenaga, Jun Hirose, Taiki Futagami, Masatoshi Goto, Nobutada Kimura, Kensuke Furukawa
Genome Announcements 3 ( 2 ) e00222-15 2015.3
Language：English Publishing type：Research paper (scientific journal)
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Draft genome sequence of the polychlorinated biphenyl-degrading bacterium Cupriavidus basilensis KF708 (NBRC 110671) isolated from biphenyl-contaminated soil Reviewed
Hikaru Suenaga, Atsushi Yamazoe, Akira Hosoyama, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 3 ( 2 ) 00143-15 2015.3
Language：English Publishing type：Research paper (scientific journal)
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Draft genome sequence of the polychlorinated biphenyl-degrading bacterium Pseudomonas putida KF703 (NBRC 110666) isolated from biphenyl-contaminated soil Reviewed
Hikaru Suenaga, Atsushi Yamazoe, Akira Hosoyama, Nobutada Kimura, Jun Hirose, Takahito Watanabe, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 3 ( 2 ) e00142-15 2015.3
Language：English Publishing type：Research paper (scientific journal)
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Draft genome sequence of Pseudomonas abietaniphila KF717 (NBRC 110669), isolated from biphenyl-contaminated soil in Japan Reviewed
Nobutada Kimura, Atsushi Yamazoe, Akira Hosoyama, Jun Hirose, Takahito Watanabe, Hikaru Suenaga, Hidehiko Fujihara, Taiki Futagami, Masatoshi Goto, Kensuke Furukawa
Genome Announcements 3 ( 2 ) 00059-15 2015.3
Language：English Publishing type：Research paper (scientific journal)
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The use of nano-sized acicular material, sliding friction, and antisense DNA oligonucleotides to silence bacterial genes Reviewed
Yuya Mitsudome, Mamiko Takahama, Jun Hirose, Naoto Yoshida
AMB Express 4 70 2014.9
Language：English Publishing type：Research paper (scientific journal)
細胞と粘土鉱物(α-セピオライト)とのの摩擦によって生成するナノサイズの針状粒子による細菌の形質転換法をアンチセンスDNAを利用した遺伝子の不活化に応用した。本法により、大腸菌のβラクタマーゼ遺伝子、βガラクトシダーゼ遺伝子、枯草菌の胞子形成に関与するspoOA遺伝子の他、PCB分解菌Psudomonas psudoalcaligenesのビフェニル代謝酵素bphD遺伝子の抑制に成功した。